During its history, Cebu Ferries operated the following vessels:
Ferries
M/V Cebu Ferry 1 as M/V St. Agustine of Hippo
Cebu Ferry 1
M/V Cebu Ferry 2 as M/V St. Anthony de Padua
Cebu Ferry 2
M/V Cebu Ferry 3 as M/V St. Ignatius of Loyola
Cebu Ferry 3
Our Lady of Mount Carmel[4] (sold to George and Peter Lines & renamed as M/V GP Ferry 2. Was later sold to Lite Shipping Inc. and was renamed to M/V Lite Ferry 3.)
Our Lady of Lourdes
Our Lady of Montserrat
Our Lady of Good Voyage (sold to Gothong Southern and renamed as M/V Doña Conchita Sr., but was later sold by the company to Trans-Asia Shipping Lines and was renamed as M/V Trans-Asia 9. Was sold to local breakers and was broken up in Cebu)
Our Lady of Manaoag
Our Lady of Banneux
Our Lady of Fatima[5]
Our Lady of Guadalupe
Our Lady of the Rule[6] (broken-up by ship breakers in Alang, India)
^"WG&A to absorb operations of Cebu Ferries". Philippine Daily Inquirer. 28 August 2003. Retrieved 9 June 2023.
^"Market Holding On To Thursday Big Gains". Manila Standard. 18 December 1995. Retrieved 9 June 2023.
^"Chinese firm to become top Philippine ferry operator". ABS-CBN News. 2010-12-05. Archived from the original on 2011-01-26. Retrieved 3 February 2013.
^"Wakanatsu - Photo of Our Lady of Mount Carmel". www.wakanatsu.com. Retrieved 2016-11-15.
^Napallacan, Jhunnex (19 September 2005). "Fire Stalls Trip To Cebu Of Ship With 620 Passengers". Philippine Daily Inquirer. Retrieved 9 June 2023.
^"Wakanatsu - Photo of Our Lady of Rule". www.wakanatsu.com. Retrieved 2016-11-15.